PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g08860.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 300aa    MW: 33068.8 Da    PI: 8.4569
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g08860.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.51.8e-3038138599
                     -..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS
              B3   5 ltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 
                      tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l+
  Vang09g08860.1  38 VTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGlGDmYRHRLY 132
                     689***********************66677899*************************************************766888899999 PP

                     EEEE-S CS
              B3  94 vkvfrk 99 
                     + ++r+
  Vang09g08860.1 133 IDWRRR 138
                     999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.70434139IPR003340B3 DNA binding domain
SMARTSM010191.1E-1834139IPR003340B3 DNA binding domain
CDDcd100177.13E-2438121No hitNo description
Gene3DG3DSA:2.40.330.103.9E-3738140IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.68E-2838136IPR015300DNA-binding pseudobarrel domain
PfamPF023624.0E-2838138IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDLIRQVKGT YSDSREEEEE EEVTEIIGIT REAESSMVTP SDVGKLNRLV IPKQHAEKYF  60
PLDSSSNEKG LLLNFEDRNG KVWRFRYSYW NSSQSYVMTK GWSRFVKEKK LDAGDIVSFQ  120
RGLGDMYRHR LYIDWRRRTD HGHPPSDPSA SPLFLPSIRW SSMPMGGGAD QNLAGRGNSI  180
VPMIIDSVPV NVGHRNHRHG HGGMSSGGGS STTSSGKRLR LFGVNMECAS SGEDSKGLSL  240
GSAAHVTVGN SLPSSSSLQQ RLRMPHEDPL SSSARFGDHK GGSGTSLLFD LDPSLQYHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-473815018129DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139042.16e-88hypothetical protein PHAVU_009G260100g
SwissprotQ9MAN14e-68NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLA0A151U8D95e-89A0A151U8D9_CAJCA; B3 domain-containing protein Os03g0120900
STRINGGLYMA19G45090.11e-70(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.11e-64B3 family protein